Publications

Modeling

  1. R. Löhner, H. Antil, A. Srinivasan, S. Idelsohn, and E. Onate. High-Fidelity Simulation of Pathogen Propagation, Transmission and Mitigation in the Built Environment. Arch. Computat. Methods Eng. (2021).
  2. Sadeghi Lahijani M, Gayatri R, Islam T, Srinivasan A, and Namilae S. Architecture-Aware Modeling of Pedestrian Dynamics. Journal of the Indian Institute of Science (2021).
  3. Derjany P, Namilae S, and Srinivasan A. Parameter Space Exploration in Pedestrian Queue Design to Mitigate Infectious Disease Spread. Journal of the Indian Institute of Science (2021).
  4. Islam T, Sadeghi Lahijani M, Srinivasan A, Namilae S, Mubayi A, and Scotch M. From Bad to Worse: Airline Boarding Changes in Response to COVID-19. Royal Society Open Science, 8201019201019 (2021). http://doi.org/10.1098/rsos.201019
  5. Derjany P, Namilae S, Liu D, Srinivasan A (2020) Multiscale Model for the Optimal Design of Pedestrian Queues to Mitigate Infectious Disease Spread. PLoS ONE 15(7): e0235891. https://doi.org/10.1371/journal.pone.0235891
  6. M.S. Lahijani, T. Islam, A. Srinivasan, and S. Namilae. Constrained Linear Movement Model (CALM): Simulation of passenger movement in airplanes. PLoS ONE 15(3): e0229690 (2020). https://doi.org/10.1371/journal.pone.0229690.
  7. P. Derjany, S. Namilae, D. Liu, and A. Srinivasan. Computational Modeling Framework for the Study of Infectious Disease Spread through Commercial Air-Travel IEEE Aerospace Conference, 2020.
  8. M. Ghaffari, A. Srinivasan, and X. Liu. High-Resolution Home Location Prediction from Tweets using Deep Learning with Dynamic Structure (Detailed version). IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM). 2019.
  9. M. Ghaffari, A. Srinivasan, A. Mubayi, X. Liu, and K. Viswanathan. Next-Generation High-Resolution Vector-Borne Disease Risk Assessment (Detailed version). IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM). 2019.
  10. M. Ghaffari, J. Wang, A. Chari, A. Srinivasan, K. Viswanathan, A. Mubayi, and H. Chi. Integrating Travel and Epidemic Models for Vector Borne Disease Surveillance. 7th International Conference on Innovations in Travel Modeling (ITIM). National Academies – Transportation Research Board. 2018.
  11. Derjany P, Namilae S, Mubayi A, Scotch M, Srinivasan A. Effect of Pedestrian Movement on the Spread of Infectious Diseases during Air-travel. Transportation Research Forum Proceedings, (2017).
  12. Derjany P, Namilae S, Mubayi A, Scotch M, Srinivasan A. Molecular Dynamics Like Numerical Approach for Studying Infection Propagation. Twenty Fifth International conference on composites and nano engineering, July (2017).
  13. Namilae S, Derjany P, Mubayi A, Scotch M, Srinivasan A. Multiscale model for pedestrian and infection dynamics during air travel. Physical Review E, 95(5) (2017) 052320.
  14. Namilae S, Srinivasan A, Mubayi A, Scotch M, Pahle R. Self-Propelled Pedestrian Dynamics Model: Application to Passenger Movement and Infection Propagation in Airplanes. Physica A, vol. 465 (2017) 248-260.
  15. Namilae S, Srinivasan A, Sudheer C, Mubayi A, Pahle R, Scotch M. Self-Propelled Pedestrian Dynamics Model for Studying Infectious Disease Propagation during Air-Travel. Journal of Transport and Health, 3(2) (2016) S40.
  16. Magee D, Scotch M. Conceptualizing a Novel Quasi-Continuous Bayesian Phylogeographic Framework for Spatiotemporal Hypothesis Testing. AMIA Jt Summits Transl Sci Proc. 2015 Mar 23;2015:212-216.
  17. Scotch M, Suchard MA, Rabinowitz P. Analysis of Viral Genetics for Estimating Diffusion of Influenza A H6N1. AMIA Jt Summits Transl Sci Proc. 2015 Mar 23;2015:36-40.
  18. Weissenbacher D, Tahsin T, Beard R, Figaro M, Rivera R, Scotch M, Gonzalez G. Knowledge-driven geospatial location resolution for phylogeographic models of virus migration. Bioinformatics. 2015 Jun 15;31(12):i348-56.
  19. Veljkovic V, Glisic S, Muller CP, Scotch M, Branch DR, Perovic VR, Sencanski M, Veljkovic N, Colombatti A. In silico analysis suggests interaction between Ebola virus and the extracellular matrix. Front Microbiol. 2015 Feb 19;6:135.
  20. Magee D, Beard R, Suchard MA, Lemey P, Scotch M. Combining phylogeography and spatial epidemiology to uncover predictors of H5N1 influenza A virus diffusion. Arch Virol. 2015 Jan;160(1):215-24.
  21. Kane MJ, Price N, Scotch M, Rabinowitz P. Comparison of ARIMA and random forest time series models for prediction of avian influenza H5N1 outbreaks. BMC Bioinformatics. 2014 Aug 13;15:276.
  22. Scotch M, Lam TT, Pabilonia KL, Anderson T, Baroch J, Kohler D, DeLiberto TJ. Diffusion of influenza viruses among migratory birds with a focus on the Southwest United States. Infect Genet Evol. 2014 Aug;26:185-93.

Computation

  1. S. Chunduri , M. Ghaffari, M.S. Lahijani, A. Srinivasan, and S. Namilae. Parallel Low Discrepancy Parameter Sweep for Public Health Policy. IEEE/ACM International Symposium on Cluster, Cloud, and Grid Computing (CCGrid), (2018).
  2. Srinivasan A, Sudheer CD, Namilae S. Optimizing Massively Parallel Simulations of Infection Spread Through Air-Travel for Policy Analysis. IEEE/ACM International Symposium on Cluster, Cloud, and Grid Computing (CCGrid), (2016). 10 pages.
  3. Sudheer CD, Srinivasan A. Efficient Barrier Implementation on the POWER8 Processor. IEEE International Conference on High Performance Computing (HiPC) (2015). 9 pages.
  4. Panigrahi P, Kanchiraju S, Srinivasan A, Sudheer CD, Baruah PK. Optimizing MPI Collectives on Intel MIC Through Effective Use of Cache. IEEE International Conference on Parallel, Distributed and Grid Computing (PDGC), (2014).
  5. Sudheer CD, Krishnan S, Srinivasan A, Kent PRC. Dynamic Load Balancing for Petascale Quantum Monte Carlo Applications: The Alias Method. Computer Physics Communications, Vol. 184, (2013) 284-292.
  6. Mitra S, Sarkar S, Srinivasan A. Reuse and Refactoring of GPU Kernels to Design Complex Applications. Proceedings of the 10th IEEE International Symposium on Parallel and Distributed Processing with Applications (ISPA), (2012).
  7. Sudheer CD, Srinivasan A. Optimization of the Hop-Byte Metric for Efficient Topology Aware Mapping. Proceedings of the 19 th IEEE International Conference on High Performance Computing (HiPC) (2012).